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The large cleft in the middle is filled with DNA in the mouse DNMT1:
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The catalytic core contains a mixed seven stranded beta-sheet that is flanked by three alpha helices on either side and at one end is joined by a two stranded anti parallel beta sheet from the BAH1 domain.
The TRD is also stabilized after folding by a Cys(3)His coordination of a Zn(2+) ion:
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